Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 (2024)

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  • Leonard Schuele1,*Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 (1), Leandre Murhula Masirika2,3,4,*, Jean Claude Udahemuka5,6,*, Freddy Belesi Siangoli7, Justin Bengehya Mbiribindi7, Pacifique Ndishimye6,8, Frank M Aarestrup9, Marion Koopmans1, Bas B Oude Munnink1, Richard Molenkamp1, GREATLIFE MPOX group10
  • View AffiliationsHide Affiliations

    Affiliations:

    1Department of Viroscience, Erasmus University Medical Center, Rotterdam, the Netherlands

    2Centre de Recherche en Sciences Naturelles de Lwiro, South Kivu, DS Bukavu, Democratic Republic of the Congo

    3

    4Congo Outbreaks, Research for Development, South Kivu, Bukavu, Democratic Republic of the Congo

    5Department of Veterinary Medicine, University of Rwanda, Nyagatare, Rwanda

    6Genomics Research and Development Division, Stansile Research Organization, Kigali, Rwanda

    7Division Provinciale de la Santé, South Kivu, Bukavu, Democratic Republic of the Congo

    8Research and Innovation Centre, African Institute for Mathematical Sciences (AIMS), Kigali, Rwanda

    9Research Group for Genomic Epidemiology, National Food Institute, Technical University of Denmark, Kgs. Lyngby, Denmark

    10The members of the network are listed under Collaborators

    *These authors contributed equally to this work and share first authorship

    Correspondence:

    Leonard Schuele

    L.schuleerasmusmc.nl

  • View Collaborators

    Collaborators:Marjan Boter,Hayley Cassidy,Léandre Mutimbwa Mambo,Gitta Overbeek,Jean Pierre Musabyimana,Jules Ndoli,Saria Otani

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    Citation style for this article:Schuele Leonard, Masirika Leandre Murhula, Udahemuka Jean Claude, Siangoli Freddy Belesi, Mbiribindi Justin Bengehya, Ndishimye Pacifique, Aarestrup Frank M, Koopmans Marion, Oude Munnink Bas B, Molenkamp Richard, GREATLIFE MPOX group.Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024.Euro Surveill. 2024;29(32):pii=2400486.https://doi.org/10.2807/1560-7917.ES.2024.29.32.2400486Received: 23 Jul 2024;Accepted: 07 Aug 2024

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Abstract

Monkeypox virus (MPXV) is an emerging zoonotic pathogen with complex epidemiology necessitating rapid diagnosis and distinguishing between clades and subclades. The emerging Clade Ib lacks the genomic region used in the Clade I-specific assay from the Centers for Disease Control and Prevention. We report an MPXV real-time PCR to specifically detect Clade Ib. The assay demonstrated proficient sensitivity and specificity in 92 samples and can be included along other TaqMan-based assays to detect MPXV and distinguish between clades and subclades.

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2024-08-08

2024-08-11

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Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 (4)

Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 (5)

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References

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  4. Li Y, Zhao H, Wilkins K, Hughes C, Damon IK. Real-time PCR assays for the specific detection of monkeypox virus West African and Congo Basin strain DNA. J Virol Methods. 2010;169(1):223-7. https://doi.org/10.1016/j.jviromet.2010.07.012PMID: 20643162

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  8. Oude Munnink B. Preliminary analysis of full genome sequences of 58 MPXV clade Ib cases from Kamituga and Kamanyola, South-Kivu, DRC. Virological.org discussion forum; 2024. Available from: https://virological.org/t/preliminary-analysis-of-full-genome-sequences-of-58-mpxv-clade-ib-cases-from-kamituga-and-kamanyola-south-kivu-drc/975/1

  9. Ladnyj ID, Ziegler P, Kima E. A human infection caused by monkeypox virus in Basankusu Territory, Democratic Republic of the Congo. Bull World Health Organ. 1972;46(5):593-7. https://doi.org/10.1016/j.jviromet.2010.07.012PMID: 4340218

  10. Ježek Z, Grab B, Szczeniowski MV, Paluku KM, Mutombo M. Human monkeypox: secondary attack rates. Bull World Health Organ. 1988;66(4):465-70.PMID: 2844429

  11. Rimoin AW, Mulembakani PM, Johnston SC, Lloyd Smith JO, Kisalu NK, Kinkela TL, et al. Major increase in human monkeypox incidence 30 years after smallpox vaccination campaigns cease in the Democratic Republic of Congo. Proc Natl Acad Sci USA. 2010;107(37):16262-7. https://doi.org/10.1073/pnas.1005769107PMID: 20805472

  12. Masirika LM, Nieuwenhuijse DF, Ndishimye P, Udahemuka JC, Kitwanda Steeven B, Barhatwira Gisele N, et al. Mapping the distribution and describing the first cases from an ongoing outbreak of a new strain of mpox in South Kivu, eastern Democratic Republic of Congo between September 2023 to April 2024. medRxiv. 2024:05.10.24307057. http://dx.doi.org/10.1101/2024.05.10.24307057

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  15. Huo S, Chen Y, Lu R, Zhang Z, Zhang G, Zhao L, et al. Development of two multiplex real-time PCR assays for simultaneous detection and differentiation of monkeypox virus IIa, IIb, and I clades and the B.1 lineage. Biosaf Health. 2022;4(6):392-8. https://doi.org/10.1016/j.bsheal.2022.10.005PMID: 36406059

Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024

<p class="citation"><span>Citation style for this article:</span><span class="meta-value authors"><a href="/search?value1=Leonard+Schuele&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Schuele Leonard</a>, <a href="/search?value1=Leandre+Murhula+Masirika&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Masirika Leandre Murhula</a>, <a href="/search?value1=Jean+Claude+Udahemuka&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Udahemuka Jean Claude</a>, <a href="/search?value1=Freddy+Belesi+Siangoli&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Siangoli Freddy Belesi</a>, <a href="/search?value1=Justin+Bengehya+Mbiribindi&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Mbiribindi Justin Bengehya</a>, <a href="/search?value1=Pacifique+Ndishimye&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Ndishimye Pacifique</a>, <a href="/search?value1=Frank+M+Aarestrup&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Aarestrup Frank M</a>, <a href="/search?value1=Marion+Koopmans&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Koopmans Marion</a>, <a href="/search?value1=Bas+B+Oude+Munnink&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Oude Munnink Bas B</a>, <a href="/search?value1=Richard+Molenkamp&option1=author&noRedirect=true" class="nonDisambigAuthorLink">Molenkamp Richard</a>, <a href="/search?value1=GREATLIFE+MPOX+group&option1=author&noRedirect=true" class="nonDisambigAuthorLink">GREATLIFE MPOX group</a></span>.Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024.<a href="/content/ecdc">Euro Surveill.</a> 2024;29(32):pii=2400486.<a href="https://doi.org/10.2807/1560-7917.ES.2024.29.32.2400486" title="doi link" target="_blank">https://doi.org/10.2807/1560-7917.ES.2024.29.32.2400486</a><span class="ES_Article_citation"><span class="generated">Received</span>: 23 Jul 2024;&nbsp;&nbsp;<span class="generated">Accepted</span>: 07 Aug 2024 </span></p>

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Real-time PCR assay to detect the novel Clade Ib monkeypox virus, September 2023 to May 2024 (6)

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